J. For. Sci., 2023, 69(4):144-157 | DOI: 10.17221/11/2023-JFS

Distribution of genetic variability in mature and progeny populations of Abies alba Mill. from the Polish Western and Eastern CarpathiansOriginal Paper

Marcin Zarek ORCID...1, Marta Kempf ORCID...2
1 Department of Forest Ecosystem Protection, Faculty of Forestry, University of Agriculture in Krakow, Poland
2 Department of Ecology and Silviculture, Faculty of Forestry, University of Agriculture in Krakow, Poland

This study aimed to compare patterns in the genetic structure of 27 mature stands and the natural regeneration of A. alba in the Eastern and Western Carpathians within the introgression zone of two refugial lineages from the Apennine and Balkan peninsulas. The distribution of the genetic diversity of fir stands was analysed using paternally inherited chloroplast DNA and five nuclear dominant inter simple sequence repeat markers (ISSRs). The study showed that the Balkan haplotype prevailed in both parental and progeny populations, and this haplotype was found in many mature Eastern Carpathian stands. Relatively high levels of genetic diversity were found in the mature stands (effective number of alleles Ne = 1.517, Shannon index I = 0.436, expected heterozygosity He = 0.295) and progeny (Ne = 1.515, I = 0.436 and He = 0.294) of silver fir. The analysis of molecular variance (AMOVA) revealed slight differences among the mature fir stands from the Western and Eastern Carpathians, with a value of 1.1%. According to principal coordinates analysis (PCoA) and STRUCTURE analyses, the populations, including stands of mature and progeny trees, were genetically separated into two groups. Slight genetic differences between the mature and progeny populations in the Polish Carpathians indicate sound gene pool transmission, which is essential for creating new selection and breeding programmes.

Keywords: chloroplast DNA; genetic diversity; genetic lineages; silver fir; simple sequence repeat markers (ISSR)

Received: January 25, 2023; Revised: March 3, 2023; Accepted: March 7, 2023; Prepublished online: April 4, 2023; Published: April 25, 2023  Show citation

ACS AIP APA ASA Harvard Chicago Chicago Notes IEEE ISO690 MLA NLM Turabian Vancouver
Zarek M, Kempf M. Distribution of genetic variability in mature and progeny populations of Abies alba Mill. from the Polish Western and Eastern Carpathians. J. For. Sci. 2023;69(4):144-157. doi: 10.17221/11/2023-JFS.
Download citation

References

  1. Amm A., Pichot C., Dreyfus P., Davi H., Fady B. (2012): Improving the estimation of landscape scale seed dispersal by integrating seedling recruitment. Annals of Forest Science, 69: 845-856. Go to original source...
  2. Awad L., Fady B., Khater C., Roig A., Cheddadi R. (2014): Genetic structure and diversity of the endangered fir tree of Lebanon (Abies cilicica Carr.): Implications for conservation. PLOS One, 9: e90086. Go to original source... Go to PubMed...
  3. Bellard C., Bertelsmeier C., Leadley P., Thuiller W., Courchamp F. (2012): Impacts of climate change on the future of biodiversity. Ecology Letters, 15: 365-377. Go to original source... Go to PubMed...
  4. Bosela M., Popa I., Gömöry D., Longauer R., Tobin B., Kyncl J., Kyncl T., Nechita C., Petráą R., Sidor C.G., ©ebeň V., Büntgen U. (2016): Effects of post-glacial phylogeny and genetic diversity on the growth variability and climate sensitivity of European silver fir. Journal of Ecology, 104: 716-724. Go to original source...
  5. Bréda N., Peiffer M. (2014): Vulnerability to forest decline in a context of climate changes: New prospects about an old question in forest ecology. Annals of Forest Science, 71: 627-631. Go to original source...
  6. Cremer E., Liepelt S., Sebastiani F., Buonamici A., Michalczyk I.M., Ziegenhagen B., Vendramin G.G. (2006): Identification and characterisation of nuclear microsatellite loci in Abies alba Mill. Molecular Ecology Notes, 6: 374-376. Go to original source...
  7. Cremer E., Ziegenhagen B., Schulerowitz K., Mengel C., Donges K., Bialozyt R., Hussendörfer E., Liepelt S. (2012): Local seed dispersal in European silver fir (Abies alba Mill.): Lessons learned from a seed trap experiment. Trees, 26: 987-996. Go to original source...
  8. Cvrčková H., Máchová P., Malá J. (2015): Use of nuclear microsatellite loci for evaluating genetic diversity among selected populations of Abies alba Mill. in the Czech Republic. Journal of Forest Science, 61: 345-351. Go to original source...
  9. Demesure B., Sodzi N., Pettit R.J. (1995): A set of universal primers for amplification of polymorphic non-coding regions of mitochondrial and chloroplast DNA in plants. Molecular Ecology, 4: 129-134. Go to original source... Go to PubMed...
  10. Dumoulin S., Demesure B., Petit R.J. (1995): Inheritance of chloroplast and mitochondrial genomes in pedunculate oak investigated with an efficient PCR method. Theoretical and Applied Genetics, 91: 1253-1256. Go to original source... Go to PubMed...
  11. Earl D.A., von Holdt B.M. (2012): STRUCTURE HARVESTER: A website and program for visualising STRUCTURE output and implementing the Evanno method. Conservation Genetics Resources, 4: 359-361. Go to original source...
  12. Evanno G., Regnaut S., Goudet J. (2005): Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study. Molecular Ecology, 14: 2611-2620. Go to original source... Go to PubMed...
  13. Gömöry D., Longauer R., Liepelt S., Ballian D., Brus R., Kraigher H., Parpanara V.I., Parpan T.V., Paule L., Stupar V.I., Ziegenhagen B. (2004): Variation patterns of mitochondrial DNA of Abies alba Mill. in suture zones of post-glacial migration in Europe. Acta Societatis Botanicorum Poloniae, 73: 203-206. Go to original source...
  14. Gömöry D., Paule L., Krajmerová D., Romąáková I., Longauer R. (2012): Admixture of genetic lineages of different glacial origin: A case study of Abies alba Mill. in the Carpathians. Plant Systematics and Evolution, 298: 703-712. Go to original source...
  15. Grover A., Sharma P.C. (2016): Development and use of molecular markers: Past and present. Critical Reviews in Biotechnology, 36: 290-302. Go to original source... Go to PubMed...
  16. Hamrick J.L. (2004): Response of forest trees to global environmental changes. Forest Ecology and Management, 197: 323-335. Go to original source...
  17. Hamrick J.L., Godt M.J.W., Sherman-Broyles S.L. (1992): Factors influencing levels of genetic diversity in woody plant species. New Forests, 6: 95-124. Go to original source...
  18. Hewitt G.M. (1999): Post-glacial re-colonisation of European biota. Biological Journal of the Linnean Society, 68: 87-112. Go to original source...
  19. Hui-yu L., Jing J., Gui-feng L., Xu-jun M., Jing-xiang D., Shi-jie L. (2005): Genetic variation and division of Pinus sylvestris provenances by ISSR markers. Journal of Forestry Research, 16: 216-218. Go to original source...
  20. Kempf M., Zarek M., Paluch J. (2020): The pattern of genetic variation, survival and growth in the Abies alba Mill. Population within the introgression zone of two refugial lineages in the Carpathians. Forests, 11: 849. Go to original source...
  21. Kim Y.M., Hong K.N., Lee J.W., Yang B.H. (2014): Genetic variation of Abies holophylla populations in South Korea Based on ISSR markers. Journal of Korean Forest Society, 103: 182-188. Go to original source...
  22. Konnert M., Bergmann F. (1995): The geographical distribution of genetic variation of silver fir (Abies alba, Pinaceae) in relation to its migration history. Plant Systematics and Evolution 196: 19-30. Go to original source...
  23. Kosinska J., Lewandowski A., Chalupka W. (2007): Genetic variability of Scots pine maternal populations and their progenies. Silva Fennica, 41: 5-12. Go to original source...
  24. Kremer A., Ronce O., Robledo-Arnuncio J.J., Guillaume F., Bohrer G., Nathan R., Bridle J.R., Gomulkiewicz R., Klein E.K., Ritland K., Kuparinen A., Gerber S., Schueler S. (2012): Long-distance gene flow and adaptation of forest trees to rapid climate change. Ecology Letters, 15: 378-392. Go to original source... Go to PubMed...
  25. Labra M., Grassi F., Sgorbati S., Ferrari C. (2006): Distribution of genetic variability in southern populations of Scots pine (Pinus sylvestris L.) from the Alps to the Apennines. Flora - Morphology, Distribution, Functional Ecology of Plants, 201: 468-476. Go to original source...
  26. Liepelt S., Bialozyt R., Ziegenhagen B. (2002): Wind-dispersed pollen mediates post-glacial gene flow among refugia. Proceedings of the National Academy of Sciences, 99: 14590-14594. Go to original source... Go to PubMed...
  27. Liepelt S., Cheddadi R., de Beaulieu J.L., Fady B., Gömöry D., Hussendörfer E., Konnert M., Litt T., Longauer R., Terhürne-Berson R., Ziegenhagen B. (2009): Postglacial range expansion and its genetic imprints in Abies alba (Mill.) - A synthesis from palaeobotanic and genetic data. Review of Palaeobotany and Palynology, 153: 139-149. Go to original source...
  28. Litkowiec M., Lewandowski A., Raczka G. (2016): Spatial pattern of the mitochondrial and chloroplast genetic variation in poland as a result of the migration of Abies alba Mill. from different glacial refugia. Forests, 7: 284. Go to original source...
  29. Loarie S.R., Duffy P.B., Hamilton H., Asner G.P., Field C.B., Ackerly D.D. (2009): The velocity of climate change. Nature, 462: 1052-1055. Go to original source... Go to PubMed...
  30. Loveless M.D., Hamrick J.L. (1984): Ecological determinants of genetic structure in plant populations. Annual Review of Ecology and Systematics, 15: 65-95. Go to original source...
  31. Major E.I., Höhn M., Avanzi C., Fady B., Heer K., Opgenoorth L., Piotti A., Popescu F., Postolache D., Vendramin G.G., Csilléry K. (2021): Fine-scale spatial genetic structure across the species range reflects recent colonisation of high elevation habitats in silver fir (Abies alba Mill.). Molecular Ecology, 30: 5247-5265. Go to original source... Go to PubMed...
  32. Masternak K., Niebrzydowska B., Głębocka K. (2015): Genetic variation of silver fir (Abies alba Mill.) preserved in the Katowice Forest District. Forest Research Papers, 76: 315-321. Go to original source...
  33. Mauri A., de Rigo D., Caudullo G. (2016): Abies alba in Europe: Distribution, habitat, usage and threats. In: San-Miguel-Ayanz J., de Rigo D., Caudullo G., Houston Durrant T., Mauri A. (eds): European Atlas of Forest Tree Species. Luxembourg, Publication Office of the European Union: 48-49.
  34. Meloni M., Perini D., Filigheddu R., Binelli G. (2006): Genetic variation in five Mediterranean populations of Juniperus phoenicea as revealed by inter-simple sequence repeat (ISSR) markers. Annals of Botany, 97: 299-304. Go to original source... Go to PubMed...
  35. Nei M. (1972): Genetic distance between populations. The American Naturalist, 106: 283-292. Go to original source...
  36. Nosil P., Feder J.L. (2013): Genome evolution and speciation: toward quantitative descriptions of pattern and process. Evolution 67: 2461-2467. Go to original source... Go to PubMed...
  37. Nowakowska J.A, Zachara T., Konecka A (2014): Genetic variability of Scots pine (Pinus sylvestris L.) and Norway spruce (Picea abies L. Karst.) natural regeneration compared with their maternal stands. Forest Research Papers, 75: 47-54. Go to original source...
  38. Nybom H., Bartish I.V. (2000): Effects of life history traits and sampling strategies on genetic diversity estimates obtained with RAPD markers in plants. Perspectives in Plant Ecology, Evolution and Systematics, 3: 93-114. Go to original source...
  39. Paluch J., Zarek M., Kempf M. (2019): The effect of population density on gene flow between adult trees and the seedling bank in Abies alba Mill. European Journal of Forestry Research 138: 203-217. Go to original source...
  40. Parducci L., Szmidt A.E., Madaghiele A., Anzidei M., Vendramin G.G. (2001): Genetic variation at chloroplast microsatellites (cpSSrs) in Abies nebrodensis (Lojac.) Mattei and three neighboring Abies species. Theoretical and Applied Genetics, 102: 733-740. Go to original source...
  41. Pawlaczyk E.M., Kroplewska I., Bobowicz M.A. (2013): Postglacial migration of silver fir (Abies alba Mill.) to Poland - Analysis on the basis of mitochondrial DNA polymorphism. Sylwan, 157: 458-463.
  42. Peakall R., Smouse P.E. (2012): GenAlEx 6.5: Genetic analysis in Excel. Population genetic software for teaching and research--an update. Bioinformatics, 28: 2537-2539. Go to original source... Go to PubMed...
  43. Pidek I.A., Svitavská-Svobodová H., Van der Knaap W.O., Magyari E. (2013): Pollen percentage thresholds of Abies alba based on 13-year annual records of pollen deposition in modified Tauber traps: Perspectives of application to fossil situations. Review of Palaeobotany Palynology, 195: 26-36. Go to original source... Go to PubMed...
  44. Poska A., Pidek I.A. (2010): Pollen dispersal and deposition characteristics of Abies alba, Fagus sylvatica and Pinus sylvestris, Roztocze region (SE Poland). Vegetation History and Archaeobotany, 19: 91-101. Go to original source...
  45. Pradeep Reddy M., Sarla N., Siddiq E.A. (2002). Inter simple sequence repeat (ISSR) polymorphism and its application in plant breeding. Euphytica, 128: 9-17. Go to original source...
  46. Pritchard J.K., Stephens M., Donnelly P. (2000): Inference of population structure using multilocus genotype data. Genetics, 155: 945-959. Go to original source... Go to PubMed...
  47. Rubio-Moraga A., Candel-Perez D., Lucas-Borja M.E., Tiscar P.A., Viñegla B., Linares J.C., Gómez-Gómez L., Ahrazem O. (2012): Genetic diversity of Pinus nigra Arn. populations in Southern Spain and Northern Morocco revealed by Inter-Simple Sequence Repeat profiles. International Journal of Molecular Sciences 13: 5645-5658. Go to original source... Go to PubMed...
  48. Szczepanek K., Myszkowska D., Worobiec E., Piotrowicz K., Ziemianin M., Bielec-B±kowska Z. (2017): The long-range transport of Pinaceae pollen: An example in Kraków (southern Poland). Aerobiologia, 33: 109-125. Go to original source... Go to PubMed...
  49. Tinner W., Colombaroli D., Heiri O., Henne P.D., Steinacher M., Untenecker J., Vescovi E., Allen J.R.M., Carraro G., Conedera M., Joos F., Lotter A.F., Luterbacher J., Samartin S., Valsecchi V. (2013): The past ecology of Abies alba provides new perspectives on future responses of silver fir forests to global warming. Ecology Monographs, 83: 419-439. Go to original source...
  50. Vinceti B., Manica M., Lauridsen N., Verkerk P.J., Lindner M., Fady B. (2020): Managing forest genetic resources as a strategy to adapt forests to climate change: Perceptions of European forest owners and managers. European Journal of Forestry Research, 139: 1107-1119. Go to original source...
  51. Wakasugi T., Tsudzuki J., Ito S., Nakashima K., Tsudzuki T., Sugiura M. (1994): Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii. Proceedings of the National Academy of Sciences, 91: 9794-9798. Go to original source... Go to PubMed...
  52. Wang Z.S., Liu H., Wei N., Xu W.X.., An S.Q. (2010): Contribution of progeny cohorts to the restoration of genetic diversity in the post-harvest dragon spruce (Picea asperata) stands. Forestry, 83: 307-314. Go to original source...
  53. Willis K., Van Andel T. (2004): Trees or no trees? The environments of central and eastern Europe during the Last Glaciation. Quaternary Science Reviews, 23: 2369-2387. Go to original source...
  54. Woo L.S., Hoon Y.B., Don H.S., Ho S.J., Joo L.J. (2008): Genetic variation in natural populations of Abies nephrolepis Max. in South Korea. Annals of Forest Science, 65: 302. Go to original source...
  55. Yeh F.C., Yang R.C., Boyle T. (1999): POPGENE ver.1.32 Microsoft Windows-Based Freeware for Population Genetic analysis. Quick User Guide. Edmonton, Centre for International Forestry Research, University of Alberta: 28.
  56. Zhang Z.Y., Chen Y.Y., Li D.Z. (2005): Detection of low genetic variation in a critically endangered Chinese pine, Pinus squamata, using RAPD and ISSR markers. Biochemical Genetics, 43: 239-249. Go to original source... Go to PubMed...
  57. Zhang X.M., Gao L.M., Möller M., Li D.Z. (2009): Molecular evidence for fragmentation among populations of Taxus wallichiana var. mairei, a highly endangered conifer in China. Canadian Journal of Forestry Research, 39: 755-764. Go to original source...

This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 International (CC BY NC 4.0), which permits non-comercial use, distribution, and reproduction in any medium, provided the original publication is properly cited. No use, distribution or reproduction is permitted which does not comply with these terms.