J. For. Sci., 2020, 66(6):244-251 | DOI: 10.17221/31/2020-JFS
Morphological and molecular identification of ectomycorrhizal fungi associated with Persian oak (Quercus brantii Lindl.) treeOriginal Paper
- 1 Department of Soil Science, Faculty of Agriculture, Gorgan University of Agricultural Sciences and Natural Resources, Gorgan, Iran
- 2 Department of Soil and Water Engineering, Faculty of Agriculture, Ilam University, Ilam, Iran
- 3 Department of Plant Protection, Faculty of Agriculture, Razi University, Kermanshah, Iran
Identification of ectomycorrhizal (ECM) fungi in different ecosystems has major significance. In this research, to identity ECM fungi, we used two methods including the morphological method and the molecular method that is more precise. Basidiocarp collection of fungi associated with oak tree (Quercus brantii Lindl.) roots was carried out in the spring season 2016 and was identified by morphological and molecular methods. We also checked macroscopic and microscopic features and measured each structure using BioloMICS Measures software. To verify the morphological identification, the internal transcribed spacer (ITS) region was amplified by PCR using the primer pair ITS1/ITS4, and the sequences were analyzed. According to the morphological observations, the identified species were Amanita crocea, Boletus comptus, Tricholoma giganteum, and Inocybe rimosa. Besides, based on molecular techniques by comparing sequences, we identified five species out of the eight ones as A. crocea and other species as T. giganteum, I. rimosa and B. comptus. Both morphological and molecular methods are necessary for identifying ECM fungi associated with tree roots in the Zagros zone in the west of Iran.
Keywords: mycorrhizal symbiosis; forest ecosystem; Amanita; Tricholoma; Inocybe; Boletus
Published: June 30, 2020 Show citation
ACS | AIP | APA | ASA | Harvard | Chicago | Chicago Notes | IEEE | ISO690 | MLA | NLM | Turabian | Vancouver |
References
- Amicucci A., Zambonelli A., Giomaro G., Potenza L., Stocchi V. (1998): Identification of ectomycorrhizal fungi of the genus Tuber by species specific ITS primers. Molecular Ecology, 7: 273-277.
Go to original source...
- Bahram M., Asef M.R., Zarre S.H., Abbasi M., Reidl S. (2006): Addition to the knowledge of Amanita (Agaricales, Pluteaceae) from Iran. Rostaniha, 7: 107-119. (in Persian)
- Bahram M., Kõljalg U., Kohout P., Mirshahvaladi S., Tedersoo L. (2013): Ectomycorrhizal fungi of exotic pine plantations in relation to native host trees in Iran: evidence of host range expansion by local symbionts to distantly related host taxa. Mycorrhiza, 23: 11-19.
Go to original source...
Go to PubMed...
- Brady N.C., Weil R.R. (2008): The Nature and Properties of Soils. (ed.) New Jersey, Prentice-Hall: 472-477.
- Brundrett M.C. (2009): Mycorrhizal associations and other means of nutrition of vascular plants: understanding the global diversity of host plants by resolving conflicting information and developing reliable means of diagnosis. Plant and Soil, 320: 37-77.
Go to original source...
- Cripps C.L. (1997): The genus Inocybe in Montana aspen stands. Mycologia, 89: 670-688.
Go to original source...
- Díez J., Manjón J.L., Martin F. (2002): Molecular phylogeny of the mycorrhizal desert truffles (Terfezia and Tirmania), host specificity and edaphic tolerance. Mycologia, 94: 247-259.
Go to original source...
Go to PubMed...
- Doyle J.J., Doyle J.L. (1990): Isolation ofplant DNA from fresh tissue. Focus, 12: 39-40.
- Estadès A., Lannoy G. (2004): Les bolets européens. Bulletin Mycologique et Botanique Dauphiné-Savoie 44: 3-79.
- Felsenstein J. (1985): Phylogenies and the comparative method. The American Naturalist, 125: 1-15.
Go to original source...
- Ferdman, Y., Aviram S., Nurit R.B., Trappe J.M., Kagan-Zur V. (2005): Phylogenetic studies of Terfezia pfeilii and Choiromyces echinulatus (Pezizales) support new genera for southern African truffles: Kalaharituber and Eremiomyces. Mycological Research, 109: 237-245.
Go to original source...
Go to PubMed...
- Gandeboeuf D., Dupré C., Chevalier G. (1994): Différenciation des truffes européennes par l'analyse des isoenzymes. Acta Botanica Gallica, 141: 455-463.
Go to original source...
- Hall T.A. (1999): BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows. Nucleic Acids Symposium Series, 95: 95-98.
- Henrion B., Chevalier G., Martin F. (1994): Typing truffle species by PCR amplification of the ribosomal DNA spacers. Mycological Research, 98: 37-43.
Go to original source...
- Itoo Z.A., Reshi Z.A. (2013): The multifunctional role of ectomycorrhizal associations in forest ecosystem processes. The Botanical Review, 79: 371-400.
Go to original source...
- Jacobsson S. (2008): Key to Inocybe. In: Knudsen H., Vesterholt J. (eds): Funga Nordica. Agaricoid, boletoid and cyphelloid genera. Copenhagen, Nordsvamp: 868-906.
- Jairus T., Mpumba R., Chinoya S., Tedersoo L. (2011): Invasion potential and host shifts of Australian and African ectomycorrhizal fungi in mixed eucalypt plantations. New Phytologist, 192: 179-187.
Go to original source...
Go to PubMed...
- Jamali S., Banihashemi Z. (2013): Species-specific ITS primers for the identification of Picoa juniperi and Picoa lefebvrei and using nested-PCR for detection of P. juniperiin planta. Molecular Biology Reports, 40: 5701-5712.
Go to original source...
Go to PubMed...
- Kim H.K., Kim Y.S., Seok S.J., Kim G.P., Cha D.Y. (1998): Artificial cultivation of Tricholoma giganteum collected in Korea (I) - Morphological charateristics of fruitbody and environmental condition in habitat of T. giganteum. The Korean Journal of Mycology, 26: 182-186.
- Kirk P., Cannon P.F., Minter D.W., Stalpers J.A. (2008): Ainsworth and Bisby's Dictionary of the Fungi. In: Lang E.J.: Edible fungi. Wallingford, CAB International: 230-321.
Go to original source...
- Knudsen H., Vesterholt J. (2008): Funga Nordica: Agaricoid, Boletoid and Cyphelloid Genera. In: Knudsen H., Vesterholt J. (eds): Fungi. Copenhagen, Nordsvamp: 450-471.
- Korhonen A., Lehto T., Heinonen J., Repo T. (2019): Wholeplant frost hardiness of mycorrhizal (Hebeloma sp. or Suillus luteus) and non-mycorrhizal Scots pine seedlings. Tree Physiology, 39: 951-960.
Go to original source...
Go to PubMed...
- Larsson E., Ryberg M., Moreau P.A., Mathiesen Å.D., Jacobsson S. (2009): Taxonomy and evolutionary relationships within species of section Rimosae (Inocybe) based on ITS, LSU and mtSSU sequence data. Persoonia, 23: 86-98.
Go to original source...
Go to PubMed...
- Latha K.D., Manimohan P. (2016): Five new species of Inocybe (Agaricales) from tropical India. Mycologia, 108: 110-122.
Go to original source...
Go to PubMed...
- Lothamer K., Brown S.P., Mattox J.D., Jumpponen A. (2014): Comparison of root-associated communities of native and non-native ectomycorrhizal hosts in an urban landscape. Mycorrhiza, 24: 267-280.
Go to original source...
Go to PubMed...
- Mirzaei J., Heydari M. (2014): Relationship between environmental factors, colonization and abundance of arbuscular mycorrhizal fungi associated with Amygdalus scoparia in Zagros forests. Iranian of Journal of Forest, 6: 445-456.
- Moser M., Kibby G. (1983): Keys to agarics and boleti. In: Polyporales, Boletales, Agaricales, Russulales. London, Roger Phillips: 252-266.
- Neuner-Plattner I., Grabher T., Hall I.R., Stöffler G., Griffin F., Haselwandter K. (1999): A comparison of immunological assays for the identification of Tuber spp. and other edible ectomycorrhizal fungi. Mycological Research, 103: 403-412.
Go to original source...
- Pande V., Palni U.T., Singh S.P. (2004): Species diversity of ectomycorrhizal fungi associated with temperate forest of Western Himalaya: a preliminary assessment. Current Science, 21: 1619-1623.
- Paolocci F., Rubini A., Granetti B., Arcioni S. (1999): Rapid molecular approach for a reliable identification of Tuber spp. ectomycorrhizae. FEMS Microbiology Ecology, 28: 23-30.
Go to original source...
- Papa G., Balbi P., Audisio G. (1987): Preliminary study of fungal spores by pyrolysis-gas chromatography. Journal of Analytical and Applied Pyrolysis, 11: 539-548.
Go to original source...
- Pushpa H., Purushothama K.B., Ramesh-Thirumalesh D.H. (2014): Taxonomic studies and molecular characterisation of Tricholoma giganteum and Calocybe indica isolates from Bangalore. Journal of Biochemical Technology, 3: 218-220.
- Querejeta J., Egerton-Warburton L.M., Allen M.F. (2009): Topographic position modulates the mycorrhizal response of oak trees to interannual rainfall variability. Ecology, 90: 649-662.
Go to original source...
Go to PubMed...
- Saitou N., Nei M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4: 406-425.
Go to PubMed...
- Sambrook J., Fritsch F.E., Maniatis T. (1982): Molecular Cloning: a Laboratory Manual (Vol. 545). In: Janssen K. (ed.): Isolation of High-Molecular-Weight DNA from Mammalian CellsUsing Proteinase K and Phenol. Cold Spring Harbor, New York: 121-141.
- Sebastiana M., Pereira V.T., Alcântara A., Pais M.S., Silva A.B. (2013): Ectomycorrhizal inoculation with Pisolithus tinctorius increases the performance of Quercus suber L. (cork oak) nursery and field seedlings. New Forests, 44: 937-949.
Go to original source...
- Sagheb-Talebi, K., Pourhashemi M., Sajedi T. (2014): Forests of Iran: A Treasure from the Past, a Hope for the Future. In: Irano-Turanian Region. New York, Springer: 67-107.
Go to original source...
- Simonini G. (1992): Boletus comptus sp. nov. Rivista di Micologia, 35: 195-208.
- Simonini G. (1998): Qualche Specie Rara O Poco Conosciuta Della Famiglia Boletaceae. In: Fungi non delineati. Michigan, Mykoflora: 12-45. (in Italian with an English preface)
- Smith S.E., Read D. (2008): Arbuscular Mycorrhizae. In: Smith S.E., Read D. (eds): Mycorrhizal Symbiosis. London, Academic Press: 800.
Go to original source...
- Sylvia D.M., Williams S.E. (1992): Vesicular-arbuscular mycorrhizae and environmental stress. Mycorrhizae in Sustainable Agriculture, 54: 101-124.
Go to original source...
- Thompson J.D., Higgins D.G., Gibson T.J. (1994): CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positionspecific gap penalties and weight matrix choice. Nucleic Acids Research, 22: 4673-4680.
Go to original source...
Go to PubMed...
- Vizzini A., Simonini G., Ercole E., Voyron S. (2014): Boletus mendax, a new species of Boletus sect. Luridi from Italy and insights on the B. luridus complex. Mycological Progress, 13: 95-109.
Go to original source...
- White T.J., Bruns L., Lee S., Taylor J. (1990): Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M.A., Gelfaud D.H., Sninsky J.J., White T.J. (eds): PCR protocols. A guide to methods and applications. San Diego, Academic Press: 315-322.
Go to original source...
- Wu Q.S. (2017): Arbuscular Mycorrhizas and Stress Tolerance of Plants. In: Nadeem S.M., Khan M.Y., Waqas M.R. (eds): Arbuscular Mycorrhizas: An Overview. Singapore, Springer: 1-24.
Go to original source...
- Wurzburger N., Brookshire E.J., McCormack M.L., Lankau R.A. (2017): Mycorrhizal fungi as drivers and modulators of terrestrial ecosystem processes. New Phytologist, 213: 996-999.
Go to original source...
Go to PubMed...
- Zambonelli A. (1993): An enzyme-linked immunosorbent assay (ELISA) for the detection of Tuber albidum ectomycorrhiza. Symbiosis, 15: 71-76.
This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 International (CC BY NC 4.0), which permits non-comercial use, distribution, and reproduction in any medium, provided the original publication is properly cited. No use, distribution or reproduction is permitted which does not comply with these terms.